{"display":true,"structure":{"allele":{"alpha":{"identifier":"ipd-imgt:HLA34832","locus":"hla-b","match_type":"histo:exact","name":"HLA-B*44:03","slug":"hla_b_44_03","species_stem":"hla"},"beta":{}},"assemblies":{"1":{"assembly_name":"1n2r_1","chains":["A","B","C"],"downloaded_at":"2022-11-09T14:33:53.998408"}},"assembly_count":null,"assigned_chains":{"beta2m":{"chains":["B"],"match_type":"histo:assign_chains","score":1.0,"sequence":"IQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM"},"class_i_alpha":{"chains":["A"],"match_type":"histo:assign_chains","score":0.93,"sequence":"GSHSMRYFYTAMSRPGRGEPRFITVGYVDDTLFVRFDSDATSPRKEPRAPWIEQEGPEYWDRETQISKTNTQTYRENLRTALRYYNQSEAGSHIIQRMYGCDVGPDGRLLRGYDQDAYDGKDYIALNEDLSSWTAADTAAQITQRKWEAARVAEQLRAYLEGLCVESLRRYLENGKETLQRADPPKTHVTHHPISDHEVTLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEP"},"peptide":{"chains":["C"],"match_type":"histo:classify_peptide","sequence":"EEFGRAFSF"}},"chronology":{"deposition_date":"2002-10-24","deposition_year":2002,"release_date":"2004-03-16","release_year":2004,"revision_date":"2011-07-13","revision_year":2011},"class":"class_i","classical":true,"complex_type":"class_i_with_peptide","components":["class_i_alpha","beta2m","peptide"],"experimental_method":"X-ray diffraction","facets":{},"ligands":[],"locus":"hla-b","manually_edited":{},"missing_residues":[],"page_title":"1N2R | HLA-B*44:03 binding \"EEFGRAFSF\"","pdb_code":"1n2r","pdb_title":"A naturally selected dimorphism within the HLA-B44 supertype alters class I structure, peptide repertoire, and T cell recognition.","peptide":{"C":{"actual_length":9,"actual_sequence":"EEFGRAFSF","chain_id":"C","features":["correct_sequence_and_length"],"full_length":9,"full_sequence":"EEFGRAFSF"}},"peptide_length":9,"peptide_length_name":"nonamer","peptide_neighbours":{"1":{"neighbours":[{"position":167,"residue":"SER"},{"position":62,"residue":"ARG"},{"position":159,"residue":"TYR"},{"position":59,"residue":"TYR"},{"position":7,"residue":"TYR"},{"position":170,"residue":"ARG"},{"position":171,"residue":"TYR"},{"position":164,"residue":"CYS"},{"position":163,"residue":"LEU"},{"position":63,"residue":"GLU"},{"position":5,"residue":"MET"}],"position":1,"residue":"GLU"},"2":{"neighbours":[{"position":45,"residue":"LYS"},{"position":7,"residue":"TYR"},{"position":24,"residue":"THR"},{"position":163,"residue":"LEU"},{"position":99,"residue":"TYR"},{"position":63,"residue":"GLU"},{"position":66,"residue":"ILE"},{"position":159,"residue":"TYR"},{"position":70,"residue":"ASN"},{"position":67,"residue":"SER"},{"position":9,"residue":"TYR"}],"position":2,"residue":"GLU"},"3":{"neighbours":[{"position":9,"residue":"TYR"},{"position":99,"residue":"TYR"},{"position":66,"residue":"ILE"},{"position":155,"residue":"GLN"},{"position":156,"residue":"LEU"},{"position":159,"residue":"TYR"},{"position":97,"residue":"ARG"}],"position":3,"residue":"PHE"},"4":{"neighbours":[{"position":66,"residue":"ILE"}],"position":4,"residue":"GLY"},"5":{"neighbours":[{"position":155,"residue":"GLN"}],"position":5,"residue":"ARG"},"6":{"neighbours":[{"position":69,"residue":"THR"},{"position":73,"residue":"THR"},{"position":70,"residue":"ASN"}],"position":6,"residue":"ALA"},"7":{"neighbours":[{"position":152,"residue":"VAL"},{"position":155,"residue":"GLN"},{"position":73,"residue":"THR"},{"position":147,"residue":"TRP"},{"position":77,"residue":"ASN"}],"position":7,"residue":"PHE"},"8":{"neighbours":[{"position":77,"residue":"ASN"},{"position":73,"residue":"THR"},{"position":76,"residue":"GLU"},{"position":146,"residue":"LYS"},{"position":143,"residue":"THR"},{"position":147,"residue":"TRP"}],"position":8,"residue":"SER"},"9":{"neighbours":[{"position":77,"residue":"ASN"},{"position":123,"residue":"TYR"},{"position":146,"residue":"LYS"},{"position":84,"residue":"TYR"},{"position":95,"residue":"ILE"},{"position":74,"residue":"TYR"},{"position":142,"residue":"ILE"},{"position":143,"residue":"THR"},{"position":147,"residue":"TRP"},{"position":116,"residue":"ASP"},{"position":80,"residue":"THR"}],"position":9,"residue":"PHE"}},"peptide_sequence":"EEFGRAFSF","pockets":{"a":{"a159":{"number":159,"one_letter":"Y","three_letter":"TYR"},"a163":{"number":163,"one_letter":"L","three_letter":"LEU"},"a167":{"number":167,"one_letter":"S","three_letter":"SER"},"a171":{"number":171,"one_letter":"Y","three_letter":"TYR"},"a5":{"number":5,"one_letter":"M","three_letter":"MET"},"a59":{"number":59,"one_letter":"Y","three_letter":"TYR"},"a63":{"number":63,"one_letter":"E","three_letter":"GLU"},"a66":{"number":66,"one_letter":"I","three_letter":"ILE"},"a7":{"number":7,"one_letter":"Y","three_letter":"TYR"}},"b":{"a24":{"number":24,"one_letter":"T","three_letter":"THR"},"a34":{"number":34,"one_letter":"V","three_letter":"VAL"},"a45":{"number":45,"one_letter":"K","three_letter":"LYS"},"a63":{"number":63,"one_letter":"E","three_letter":"GLU"},"a66":{"number":66,"one_letter":"I","three_letter":"ILE"},"a67":{"number":67,"one_letter":"S","three_letter":"SER"},"a7":{"number":7,"one_letter":"Y","three_letter":"TYR"},"a70":{"number":70,"one_letter":"N","three_letter":"ASN"},"a9":{"number":9,"one_letter":"Y","three_letter":"TYR"},"a99":{"number":99,"one_letter":"Y","three_letter":"TYR"}},"c":{"a70":{"number":70,"one_letter":"N","three_letter":"ASN"},"a73":{"number":73,"one_letter":"T","three_letter":"THR"},"a74":{"number":74,"one_letter":"Y","three_letter":"TYR"},"a9":{"number":9,"one_letter":"Y","three_letter":"TYR"},"a97":{"number":97,"one_letter":"R","three_letter":"ARG"}},"d":{"a114":{"number":114,"one_letter":"D","three_letter":"ASP"},"a155":{"number":155,"one_letter":"Q","three_letter":"GLN"},"a156":{"number":156,"one_letter":"L","three_letter":"LEU"},"a159":{"number":159,"one_letter":"Y","three_letter":"TYR"},"a160":{"number":160,"one_letter":"L","three_letter":"LEU"},"a99":{"number":99,"one_letter":"Y","three_letter":"TYR"}},"e":{"a114":{"number":114,"one_letter":"D","three_letter":"ASP"},"a147":{"number":147,"one_letter":"W","three_letter":"TRP"},"a152":{"number":152,"one_letter":"V","three_letter":"VAL"},"a156":{"number":156,"one_letter":"L","three_letter":"LEU"},"a97":{"number":97,"one_letter":"R","three_letter":"ARG"}},"f":{"a116":{"number":116,"one_letter":"D","three_letter":"ASP"},"a123":{"number":123,"one_letter":"Y","three_letter":"TYR"},"a143":{"number":143,"one_letter":"T","three_letter":"THR"},"a146":{"number":146,"one_letter":"K","three_letter":"LYS"},"a147":{"number":147,"one_letter":"W","three_letter":"TRP"},"a77":{"number":77,"one_letter":"N","three_letter":"ASN"},"a80":{"number":80,"one_letter":"T","three_letter":"THR"},"a81":{"number":81,"one_letter":"A","three_letter":"ALA"},"a84":{"number":84,"one_letter":"Y","three_letter":"TYR"},"a95":{"number":95,"one_letter":"I","three_letter":"ILE"}}},"publication":{"abstract":"HLA-B*4402 and B*4403 are naturally occurring MHC class I alleles that are both found at a high frequency in all human populations, and yet they only differ by one residue on the alpha2 helix (B*4402 Asp156-->B*4403 Leu156). CTLs discriminate between HLA-B*4402 and B*4403, and these allotypes stimulate strong mutual allogeneic responses reflecting their known barrier to hemopoeitic stem cell transplantation. Although HLA-B*4402 and B*4403 share >95% of their peptide repertoire, B*4403 presents more unique peptides than B*4402, consistent with the stronger T cell alloreactivity observed toward B*4403 compared with B*4402. Crystal structures of B*4402 and B*4403 show how the polymorphism at position 156 is completely buried and yet alters both the peptide and the heavy chain conformation, relaxing ligand selection by B*4403 compared with B*4402. Thus, the polymorphism between HLA-B*4402 and B*4403 modifies both peptide repertoire and T cell recognition, and is reflected in the paradoxically powerful alloreactivity that occurs across this \"minimal\" mismatch. The findings suggest that these closely related class I genes are maintained in diverse human populations through their differential impact on the selection of peptide ligands and the T cell repertoire.","bibjson":{"author":[{"initials":"WA","lastname":"Macdonald","name":"Macdonald WA"},{"initials":"AW","lastname":"Purcell","name":"Purcell AW"},{"initials":"NA","lastname":"Mifsud","name":"Mifsud NA"},{"initials":"LK","lastname":"Ely","name":"Ely LK"},{"initials":"DS","lastname":"Williams","name":"Williams DS"},{"initials":"L","lastname":"Chang","name":"Chang L"},{"initials":"JJ","lastname":"Gorman","name":"Gorman JJ"},{"initials":"CS","lastname":"Clements","name":"Clements CS"},{"initials":"L","lastname":"Kjer-Nielsen","name":"Kjer-Nielsen L"},{"initials":"DM","lastname":"Koelle","name":"Koelle DM"},{"initials":"SR","lastname":"Burrows","name":"Burrows SR"},{"initials":"BD","lastname":"Tait","name":"Tait BD"},{"initials":"R","lastname":"Holdsworth","name":"Holdsworth R"},{"initials":"AG","lastname":"Brooks","name":"Brooks AG"},{"initials":"GO","lastname":"Lovrecz","name":"Lovrecz GO"},{"initials":"L","lastname":"Lu","name":"Lu L"},{"initials":"J","lastname":"Rossjohn","name":"Rossjohn J"},{"initials":"J","lastname":"McCluskey","name":"McCluskey J"}],"identifier":[{"id":"10.1084/jem.20030066","type":"doi"},{"id":"12939341","type":"pubmed"}],"issue":["5"],"journal":{"iso_abbreviation":"J. Exp. Med.","name":""},"pages":["679-91"],"title":"A naturally selected dimorphism within the HLA-B44 supertype alters class I structure, peptide repertoire, and T cell recognition.","type":"article","url":"https://rupress.org/jem/article/198/5/679/39873/A-Naturally-Selected-Dimorphism-within-the-HLAB44","volume":["198"],"year":[2003]},"in_pmc":"N","in_pmce":"Y","open_access":"Y"},"resolution":"1.70","same_as":{"pdbe":{"url":"https://www.ebi.ac.uk/pdbe/entry/pdb/1n2r"},"rcsb":{"url":"https://www.rcsb.org/structure/1n2r"}},"species":{"common_name":"Human","match_type":"histo:assign_species","scientific_name":"Homo sapiens","slug":"homo_sapiens"},"tcr":null,"title":"HLA-B*44:03 binding \"EEFGRAFSF\" at 1.70&#8491; resolution","unique_chain_count":3}}
