{"display":true,"structure":{"allele":{"alpha":{"identifier":"ipd-imgt:HLA34051","locus":"hla-b","match_type":"histo:exact","name":"HLA-B*57:01","slug":"hla_b_57_01","species_stem":"hla"},"beta":{}},"assemblies":{"1":{"assembly_name":"2rfx_1","chains":["A","B","C"],"downloaded_at":"2022-11-09T14:33:16.662729"}},"assembly_count":null,"assigned_chains":{"beta2m":{"chains":["B"],"match_type":"histo:assign_chains","score":1.0,"sequence":"IQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM"},"class_i_alpha":{"chains":["A"],"match_type":"histo:assign_chains","score":0.92,"sequence":"GSHSMRYFYTAMSRPGRGEPRFIAVGYVDDTQFVRFDSDAASPRMAPRAPWIEQEGPEYWDGETRNMKASAQTYRENLRIALRYYNQSEAGSHIIQVMYGCDVGPDGRLLRGHDQSAYDGKDYIALNEDLSSWTAADTAAQITQRKWEAARVAEQLRAYLEGLCVEWLRRYLENGKETLQRADPPKTHVTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWE"},"peptide":{"chains":["C"],"match_type":"histo:classify_peptide","sequence":"LSSPVTKSF"}},"chronology":{"deposition_date":"2007-10-02","deposition_year":2007,"release_date":"2008-07-08","release_year":2008,"revision_date":"2017-10-25","revision_year":2017},"class":"class_i","classical":true,"complex_type":"class_i_with_peptide","components":["class_i_alpha","beta2m","peptide"],"experimental_method":"X-ray diffraction","facets":{},"ligands":[],"locus":"hla-b","manually_edited":{},"missing_residues":[],"page_title":"2RFX | HLA-B*57:01 binding \"LSSPVTKSF\"","pdb_code":"2rfx","pdb_title":"Crystal structure of hla-b*5701, presenting the self peptide, LSSPVTKSF","peptide":{"C":{"actual_length":9,"actual_sequence":"LSSPVTKSF","chain_id":"C","features":["correct_sequence_and_length"],"full_length":9,"full_sequence":"LSSPVTKSF"}},"peptide_length":9,"peptide_length_name":"nonamer","peptide_neighbours":{"1":{"neighbours":[{"position":171,"residue":"TYR"},{"position":159,"residue":"TYR"},{"position":59,"residue":"TYR"},{"position":164,"residue":"CYS"},{"position":33,"residue":"PHE"},{"position":163,"residue":"LEU"},{"position":167,"residue":"TRP"},{"position":63,"residue":"GLU"},{"position":5,"residue":"MET"},{"position":7,"residue":"TYR"}],"position":1,"residue":"LEU"},"2":{"neighbours":[{"position":63,"residue":"GLU"},{"position":67,"residue":"MET"},{"position":159,"residue":"TYR"},{"position":9,"residue":"TYR"},{"position":7,"residue":"TYR"},{"position":99,"residue":"TYR"},{"position":45,"residue":"MET"},{"position":66,"residue":"ASN"}],"position":2,"residue":"SER"},"3":{"neighbours":[{"position":66,"residue":"ASN"},{"position":159,"residue":"TYR"},{"position":156,"residue":"LEU"},{"position":9,"residue":"TYR"},{"position":70,"residue":"SER"},{"position":99,"residue":"TYR"}],"position":3,"residue":"SER"},"4":{"neighbours":[{"position":163,"residue":"LEU"},{"position":66,"residue":"ASN"},{"position":159,"residue":"TYR"}],"position":4,"residue":"PRO"},"5":{"neighbours":[{"position":152,"residue":"VAL"},{"position":155,"residue":"GLN"},{"position":156,"residue":"LEU"},{"position":159,"residue":"TYR"}],"position":5,"residue":"VAL"},"6":{"neighbours":[{"position":152,"residue":"VAL"},{"position":73,"residue":"THR"}],"position":6,"residue":"THR"},"7":{"neighbours":[{"position":133,"residue":"TRP"},{"position":156,"residue":"LEU"},{"position":74,"residue":"TYR"},{"position":116,"residue":"SER"},{"position":147,"residue":"TRP"},{"position":152,"residue":"VAL"},{"position":77,"residue":"ASN"},{"position":114,"residue":"ASP"},{"position":73,"residue":"THR"}],"position":7,"residue":"LYS"},"8":{"neighbours":[{"position":143,"residue":"THR"},{"position":146,"residue":"LYS"},{"position":147,"residue":"TRP"},{"position":77,"residue":"ASN"},{"position":73,"residue":"THR"}],"position":8,"residue":"SER"},"9":{"neighbours":[{"position":143,"residue":"THR"},{"position":147,"residue":"TRP"},{"position":146,"residue":"LYS"},{"position":81,"residue":"ALA"},{"position":142,"residue":"ILE"},{"position":77,"residue":"ASN"},{"position":74,"residue":"TYR"},{"position":116,"residue":"SER"},{"position":80,"residue":"ILE"},{"position":84,"residue":"TYR"},{"position":123,"residue":"TYR"},{"position":95,"residue":"ILE"}],"position":9,"residue":"PHE"}},"peptide_sequence":"LSSPVTKSF","pockets":{"a":{"a159":{"number":159,"one_letter":"Y","three_letter":"TYR"},"a163":{"number":163,"one_letter":"L","three_letter":"LEU"},"a167":{"number":167,"one_letter":"W","three_letter":"TRP"},"a171":{"number":171,"one_letter":"Y","three_letter":"TYR"},"a5":{"number":5,"one_letter":"M","three_letter":"MET"},"a59":{"number":59,"one_letter":"Y","three_letter":"TYR"},"a63":{"number":63,"one_letter":"E","three_letter":"GLU"},"a66":{"number":66,"one_letter":"N","three_letter":"ASN"},"a7":{"number":7,"one_letter":"Y","three_letter":"TYR"}},"b":{"a24":{"number":24,"one_letter":"A","three_letter":"ALA"},"a34":{"number":34,"one_letter":"V","three_letter":"VAL"},"a45":{"number":45,"one_letter":"M","three_letter":"MET"},"a63":{"number":63,"one_letter":"E","three_letter":"GLU"},"a66":{"number":66,"one_letter":"N","three_letter":"ASN"},"a67":{"number":67,"one_letter":"M","three_letter":"MET"},"a7":{"number":7,"one_letter":"Y","three_letter":"TYR"},"a70":{"number":70,"one_letter":"S","three_letter":"SER"},"a9":{"number":9,"one_letter":"Y","three_letter":"TYR"},"a99":{"number":99,"one_letter":"Y","three_letter":"TYR"}},"c":{"a70":{"number":70,"one_letter":"S","three_letter":"SER"},"a73":{"number":73,"one_letter":"T","three_letter":"THR"},"a74":{"number":74,"one_letter":"Y","three_letter":"TYR"},"a9":{"number":9,"one_letter":"Y","three_letter":"TYR"},"a97":{"number":97,"one_letter":"V","three_letter":"VAL"}},"d":{"a114":{"number":114,"one_letter":"D","three_letter":"ASP"},"a155":{"number":155,"one_letter":"Q","three_letter":"GLN"},"a156":{"number":156,"one_letter":"L","three_letter":"LEU"},"a159":{"number":159,"one_letter":"Y","three_letter":"TYR"},"a160":{"number":160,"one_letter":"L","three_letter":"LEU"},"a99":{"number":99,"one_letter":"Y","three_letter":"TYR"}},"e":{"a114":{"number":114,"one_letter":"D","three_letter":"ASP"},"a147":{"number":147,"one_letter":"W","three_letter":"TRP"},"a152":{"number":152,"one_letter":"V","three_letter":"VAL"},"a156":{"number":156,"one_letter":"L","three_letter":"LEU"},"a97":{"number":97,"one_letter":"V","three_letter":"VAL"}},"f":{"a116":{"number":116,"one_letter":"S","three_letter":"SER"},"a123":{"number":123,"one_letter":"Y","three_letter":"TYR"},"a143":{"number":143,"one_letter":"T","three_letter":"THR"},"a146":{"number":146,"one_letter":"K","three_letter":"LYS"},"a147":{"number":147,"one_letter":"W","three_letter":"TRP"},"a77":{"number":77,"one_letter":"N","three_letter":"ASN"},"a80":{"number":80,"one_letter":"I","three_letter":"ILE"},"a81":{"number":81,"one_letter":"A","three_letter":"ALA"},"a84":{"number":84,"one_letter":"Y","three_letter":"TYR"},"a95":{"number":95,"one_letter":"I","three_letter":"ILE"}}},"publication":{"abstract":"The basis for strong immunogenetic associations between particular human leukocyte antigen (HLA) class I allotypes and inflammatory conditions like Beh\u00e7et's disease (HLA-B51) and ankylosing spondylitis (HLA-B27) remain mysterious. Recently, however, even stronger HLA associations are reported in drug hypersensitivities to the reverse-transcriptase inhibitor abacavir (HLA-B57), the gout prophylactic allopurinol (HLA-B58), and the antiepileptic carbamazepine (HLA-B*1502), providing a defined disease trigger and suggesting a general mechanism for these associations. We show that systemic reactions to abacavir were driven by drug-specific activation of cytokine-producing, cytotoxic CD8+ T cells. Recognition of abacavir required the transporter associated with antigen presentation and tapasin, was fixation sensitive, and was uniquely restricted by HLA-B*5701 and not closely related HLA allotypes with polymorphisms in the antigen-binding cleft. Hence, the strong association of HLA-B*5701 with abacavir hypersensitivity reflects specificity through creation of a unique ligand as well as HLA-restricted antigen presentation, suggesting a basis for the strong HLA class I-association with certain inflammatory disorders.","bibjson":{"author":[{"initials":"D","lastname":"Chessman","name":"Chessman D"},{"initials":"L","lastname":"Kostenko","name":"Kostenko L"},{"initials":"T","lastname":"Lethborg","name":"Lethborg T"},{"initials":"AW","lastname":"Purcell","name":"Purcell AW"},{"initials":"NA","lastname":"Williamson","name":"Williamson NA"},{"initials":"Z","lastname":"Chen","name":"Chen Z"},{"initials":"L","lastname":"Kjer-Nielsen","name":"Kjer-Nielsen L"},{"initials":"NA","lastname":"Mifsud","name":"Mifsud NA"},{"initials":"BD","lastname":"Tait","name":"Tait BD"},{"initials":"R","lastname":"Holdsworth","name":"Holdsworth R"},{"initials":"CA","lastname":"Almeida","name":"Almeida CA"},{"initials":"D","lastname":"Nolan","name":"Nolan D"},{"initials":"WA","lastname":"Macdonald","name":"Macdonald WA"},{"initials":"JK","lastname":"Archbold","name":"Archbold JK"},{"initials":"AD","lastname":"Kellerher","name":"Kellerher AD"},{"initials":"D","lastname":"Marriott","name":"Marriott D"},{"initials":"S","lastname":"Mallal","name":"Mallal S"},{"initials":"M","lastname":"Bharadwaj","name":"Bharadwaj M"},{"initials":"J","lastname":"Rossjohn","name":"Rossjohn J"},{"initials":"J","lastname":"McCluskey","name":"McCluskey J"}],"identifier":[{"id":"10.1016/j.immuni.2008.04.020","type":"doi"},{"id":"18549801","type":"pubmed"}],"issue":["6"],"journal":{"iso_abbreviation":"Immunity","name":""},"pages":["822-32"],"title":"Human leukocyte antigen class I-restricted activation of CD8+ T cells provides the immunogenetic basis of a systemic drug hypersensitivity.","type":"article","url":"https://www.sciencedirect.com/science/article/abs/pii/S1074761308002422","volume":["28"],"year":[2008]},"in_pmc":"N","in_pmce":"N","open_access":"N"},"resolution":"2.50","same_as":{"pdbe":{"url":"https://www.ebi.ac.uk/pdbe/entry/pdb/2rfx"},"rcsb":{"url":"https://www.rcsb.org/structure/2rfx"}},"species":{"common_name":"Human","match_type":"histo:assign_species","scientific_name":"Homo sapiens","slug":"homo_sapiens"},"tcr":null,"title":"HLA-B*57:01 binding \"LSSPVTKSF\" at 2.50&#8491; resolution","unique_chain_count":3}}
