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and public T cell receptor (TCR) usage is relatively common in many viral diseases yet surprising in the context of the large naive TCR repertoire. We examined the highly conserved Vbeta17:Valpha10.2 JM22 T cell response to the influenza matrix peptide (58-66)-HLA-A*0201 (HLA-A2-flu) through extensive kinetic, thermodynamic, and structural analyses. We found several conformational adjustments that accompany JM22-HLA-A2-flu binding and identified a binding \"hotspot\" within the Vbeta domain of the TCR. Within this hotspot, key germline-encoded CDR1 and CDR2 loop residues and a crucial but commonly coded residue in the hypervariable region of CDR3 provide the basis for the substantial bias in the selection of the germline-encoded Vbeta17 domain. The chances of having a substantial number of T cells in the naive repertoire that have HLA-A2-flu-specific Vbeta17 receptors may consequently be relatively high, thus explaining the immunodominant usage of this clonotype.","bibjson":{"author":[{"initials":"J","lastname":"Ishizuka","name":"Ishizuka J"},{"initials":"GB","lastname":"Stewart-Jones","name":"Stewart-Jones GB"},{"initials":"A","lastname":"van der Merwe","name":"van der Merwe A"},{"initials":"JI","lastname":"Bell","name":"Bell JI"},{"initials":"AJ","lastname":"McMichael","name":"McMichael AJ"},{"initials":"EY","lastname":"Jones","name":"Jones EY"}],"identifier":[{"id":"10.1016/j.immuni.2007.12.018","type":"doi"},{"id":"18275829","type":"pubmed"}],"issue":["2"],"journal":{"iso_abbreviation":"Immunity","name":""},"pages":["171-82"],"title":"The structural dynamics and energetics of an immunodominant T cell receptor are programmed by its Vbeta domain.","type":"article","url":"https://www.sciencedirect.com/science/article/abs/pii/S1074761308000411","volume":["28"],"year":[2008]},"in_pmc":"N","in_pmce":"N","open_access":"N"},"resolution":"2.40","same_as":{"pdbe":{"url":"https://www.ebi.ac.uk/pdbe/entry/pdb/2vlj"},"rcsb":{"url":"https://www.rcsb.org/structure/2vlj"},"stcrdab":{"url":"http://opig.stats.ox.ac.uk/webapps/stcrdab/StrViewer?pdb=2vlj"}},"species":{"common_name":"Human","match_type":"histo:assign_species","scientific_name":"Homo sapiens","slug":"homo_sapiens"},"tcr":{"alpha":{"chains":["D"],"subgroup":"TRAV27"},"beta":{"chains":["E"],"subgroup":"TRBV19"},"mhc_type":"class_i","pdb_code":"2vlj"},"title":"HLA-A*02:01 presenting \"GILGFVFTL\" to Alpha/Beta T cell receptor at 2.40&#8491; resolution","unique_chain_count":5}}
