{"display":true,"structure":{"allele":{"alpha":{"identifier":"ipd-imgt:HLA34767","locus":"hla-a","match_type":"histo:exact","name":"HLA-A*01:01","slug":"hla_a_01_01","species_stem":"hla"},"beta":{}},"assemblies":{"1":{"assembly_name":"3bo8_1","chains":["A","B","C"],"downloaded_at":"2022-11-09T14:32:18.591980"}},"assembly_count":null,"assigned_chains":{"beta2m":{"chains":["B"],"match_type":"histo:assign_chains","score":0.99,"sequence":"MIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM"},"class_i_alpha":{"chains":["A"],"match_type":"histo:assign_chains","score":0.89,"sequence":"GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQKMEPRAPWIEQEGPEYWDQETRNMKAHSQTDRANLGTLRGYYNQSEDGSHTIQIMYGCDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAVHAAEQRRVYLEGRCVDGLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRW"},"peptide":{"chains":["C"],"match_type":"histo:classify_peptide","sequence":"EADPTGHSY"}},"chronology":{"deposition_date":"2007-12-17","deposition_year":2007,"release_date":"2008-12-23","release_year":2008,"revision_date":"2011-07-13","revision_year":2011},"class":"class_i","classical":true,"complex_type":"class_i_with_peptide","components":["class_i_alpha","beta2m","peptide"],"experimental_method":"X-ray diffraction","facets":{},"ligands":[],"locus":"hla-a","manually_edited":{},"missing_residues":[],"page_title":"3BO8 | HLA-A*01:01 binding \"EADPTGHSY\"","pdb_code":"3bo8","pdb_title":"The high resolution crystal structure of hla-a1 complexed with the mage-a1 peptide","peptide":{"C":{"actual_length":9,"actual_sequence":"EADPTGHSY","chain_id":"C","features":["correct_sequence_and_length"],"full_length":9,"full_sequence":"EADPTGHSY"}},"peptide_length":9,"peptide_length_name":"nonamer","peptide_neighbours":{"1":{"neighbours":[{"position":62,"residue":"GLN"},{"position":63,"residue":"GLU"},{"position":33,"residue":"PHE"},{"position":171,"residue":"TYR"},{"position":163,"residue":"ARG"},{"position":164,"residue":"CYS"},{"position":170,"residue":"ARG"},{"position":159,"residue":"TYR"},{"position":59,"residue":"TYR"},{"position":5,"residue":"MET"},{"position":7,"residue":"TYR"},{"position":167,"residue":"GLY"}],"position":1,"residue":"GLU"},"2":{"neighbours":[{"position":7,"residue":"TYR"},{"position":63,"residue":"GLU"},{"position":67,"residue":"MET"},{"position":159,"residue":"TYR"},{"position":99,"residue":"TYR"},{"position":66,"residue":"ASN"}],"position":2,"residue":"ALA"},"3":{"neighbours":[{"position":159,"residue":"TYR"},{"position":155,"residue":"GLN"},{"position":66,"residue":"ASN"},{"position":156,"residue":"ARG"},{"position":99,"residue":"TYR"}],"position":3,"residue":"ASP"},"4":{"neighbours":[{"position":66,"residue":"ASN"},{"position":159,"residue":"TYR"}],"position":4,"residue":"PRO"},"5":{"neighbours":[{"position":155,"residue":"GLN"},{"position":114,"residue":"ARG"},{"position":156,"residue":"ARG"}],"position":5,"residue":"THR"},"6":{"neighbours":[{"position":73,"residue":"THR"},{"position":156,"residue":"ARG"}],"position":6,"residue":"GLY"},"7":{"neighbours":[{"position":156,"residue":"ARG"},{"position":147,"residue":"TRP"},{"position":73,"residue":"THR"},{"position":77,"residue":"ASN"},{"position":150,"residue":"VAL"},{"position":152,"residue":"ALA"},{"position":155,"residue":"GLN"}],"position":7,"residue":"HIS"},"8":{"neighbours":[{"position":143,"residue":"THR"},{"position":146,"residue":"LYS"},{"position":147,"residue":"TRP"},{"position":73,"residue":"THR"},{"position":77,"residue":"ASN"},{"position":80,"residue":"THR"}],"position":8,"residue":"SER"},"9":{"neighbours":[{"position":80,"residue":"THR"},{"position":142,"residue":"ILE"},{"position":143,"residue":"THR"},{"position":84,"residue":"TYR"},{"position":97,"residue":"ILE"},{"position":95,"residue":"ILE"},{"position":123,"residue":"TYR"},{"position":146,"residue":"LYS"},{"position":81,"residue":"LEU"},{"position":147,"residue":"TRP"},{"position":77,"residue":"ASN"},{"position":124,"residue":"ILE"},{"position":116,"residue":"ASP"}],"position":9,"residue":"TYR"}},"peptide_sequence":"EADPTGHSY","pockets":{"a":{"a159":{"number":159,"one_letter":"Y","three_letter":"TYR"},"a163":{"number":163,"one_letter":"R","three_letter":"ARG"},"a167":{"number":167,"one_letter":"G","three_letter":"GLY"},"a171":{"number":171,"one_letter":"Y","three_letter":"TYR"},"a5":{"number":5,"one_letter":"M","three_letter":"MET"},"a59":{"number":59,"one_letter":"Y","three_letter":"TYR"},"a63":{"number":63,"one_letter":"E","three_letter":"GLU"},"a66":{"number":66,"one_letter":"N","three_letter":"ASN"},"a7":{"number":7,"one_letter":"Y","three_letter":"TYR"}},"b":{"a24":{"number":24,"one_letter":"A","three_letter":"ALA"},"a34":{"number":34,"one_letter":"V","three_letter":"VAL"},"a45":{"number":45,"one_letter":"M","three_letter":"MET"},"a63":{"number":63,"one_letter":"E","three_letter":"GLU"},"a66":{"number":66,"one_letter":"N","three_letter":"ASN"},"a67":{"number":67,"one_letter":"M","three_letter":"MET"},"a7":{"number":7,"one_letter":"Y","three_letter":"TYR"},"a70":{"number":70,"one_letter":"H","three_letter":"HIS"},"a9":{"number":9,"one_letter":"F","three_letter":"PHE"},"a99":{"number":99,"one_letter":"Y","three_letter":"TYR"}},"c":{"a70":{"number":70,"one_letter":"H","three_letter":"HIS"},"a73":{"number":73,"one_letter":"T","three_letter":"THR"},"a74":{"number":74,"one_letter":"D","three_letter":"ASP"},"a9":{"number":9,"one_letter":"F","three_letter":"PHE"},"a97":{"number":97,"one_letter":"I","three_letter":"ILE"}},"d":{"a114":{"number":114,"one_letter":"R","three_letter":"ARG"},"a155":{"number":155,"one_letter":"Q","three_letter":"GLN"},"a156":{"number":156,"one_letter":"R","three_letter":"ARG"},"a159":{"number":159,"one_letter":"Y","three_letter":"TYR"},"a160":{"number":160,"one_letter":"L","three_letter":"LEU"},"a99":{"number":99,"one_letter":"Y","three_letter":"TYR"}},"e":{"a114":{"number":114,"one_letter":"R","three_letter":"ARG"},"a147":{"number":147,"one_letter":"W","three_letter":"TRP"},"a152":{"number":152,"one_letter":"A","three_letter":"ALA"},"a156":{"number":156,"one_letter":"R","three_letter":"ARG"},"a97":{"number":97,"one_letter":"I","three_letter":"ILE"}},"f":{"a116":{"number":116,"one_letter":"D","three_letter":"ASP"},"a123":{"number":123,"one_letter":"Y","three_letter":"TYR"},"a143":{"number":143,"one_letter":"T","three_letter":"THR"},"a146":{"number":146,"one_letter":"K","three_letter":"LYS"},"a147":{"number":147,"one_letter":"W","three_letter":"TRP"},"a77":{"number":77,"one_letter":"N","three_letter":"ASN"},"a80":{"number":80,"one_letter":"T","three_letter":"THR"},"a81":{"number":81,"one_letter":"L","three_letter":"LEU"},"a84":{"number":84,"one_letter":"Y","three_letter":"TYR"},"a95":{"number":95,"one_letter":"I","three_letter":"ILE"}}},"publication":{"abstract":null,"bibjson":{"author":[{"initials":"P","lastname":"Kumar","name":"Kumar P"},{"initials":"A","lastname":"Vahedi-Faridi","name":"Vahedi-Faridi A"},{"initials":"W","lastname":"Saenger","name":"Saenger W"},{"initials":"A","lastname":"Ziegler","name":"Ziegler A"},{"initials":"B","lastname":"Uchanska-Ziegler","name":"Uchanska-Ziegler B"}],"identifier":[{"id":"10.1002/pro.4","type":"doi"},{"id":"19177349","type":"pubmed"}],"issue":["1"],"journal":{"iso_abbreviation":"Protein Sci.","name":""},"pages":["37-49"],"title":"Conformational changes within the HLA-A1:MAGE-A1 complex induced by binding of a recombinant antibody fragment with TCR-like specificity.","type":"article","url":"https://onlinelibrary.wiley.com/doi/10.1002/pro.4","volume":["18"],"year":[2009]},"in_pmc":"N","in_pmce":"Y","open_access":"N"},"resolution":"1.80","same_as":{"pdbe":{"url":"https://www.ebi.ac.uk/pdbe/entry/pdb/3bo8"},"rcsb":{"url":"https://www.rcsb.org/structure/3bo8"}},"species":{"common_name":"Human","match_type":"histo:assign_species","scientific_name":"Homo sapiens","slug":"homo_sapiens"},"tcr":null,"title":"HLA-A*01:01 binding \"EADPTGHSY\" at 1.80Å resolution","unique_chain_count":3}}