{"display":true,"structure":{"allele":{"alpha":{"identifier":"uniprot:P01901","locus":"h2-k","match_type":"histo:exact","name":"H2-Kb","slug":"h2_kb","species_stem":"H2"},"beta":{}},"assemblies":{"1":{"assembly_name":"3rol_1","chains":["A","B","E"],"downloaded_at":"2022-11-09T14:36:29.471959"},"2":{"assembly_name":"3rol_2","chains":["C","D","F"],"downloaded_at":"2022-11-09T14:36:29.886001"}},"assembly_count":null,"assigned_chains":{"beta2m":{"chains":["B","D"],"match_type":"histo:assign_chains","score":1.0,"sequence":"IQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHDSMAEPKTVYWDRDM"},"class_i_alpha":{"chains":["A","C"],"match_type":"histo:assign_chains","score":1.0,"sequence":"GPHSLRYFVTAVSRPGLGEPRYMEVGYVDDTEFVRFDSDAENPRYEPRARWMEQEGPEYWERETQKAKGNEQSFRVDLRTLLGYYNQSKGGSHTIQVISGCEVGSDGRLLRGYQQYAYDGCDYIALNEDLKTWTAADMAALITKHKWEQAGEAERLRAYLEGTCVEWLRRYLKNGNATLLRTDSPKAHVTHHSRPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLGKEQYYTCHVYHQGLPEPLTLRWE"},"peptide":{"chains":["E","F"],"match_type":"histo:classify_peptide","sequence":"AVYNFATM"}},"chronology":{"deposition_date":"2011-04-26","deposition_year":2011,"release_date":"2012-04-04","release_year":2012,"revision_date":"2012-04-04","revision_year":2012},"class":"class_i","classical":true,"complex_type":"class_i_with_peptide","components":["class_i_alpha","beta2m","peptide"],"experimental_method":"X-ray diffraction","facets":{},"ligands":[],"locus":"h2-k","manually_edited":{},"missing_residues":[],"page_title":"3ROL | H2-Kb binding \"AVYNFATM\"","pdb_code":"3rol","pdb_title":"Murine Class I major histocompatibility complex h-2kb in complex with post-translationally modified lcmv-derived gp34-41 peptide, comprising a nitrotyrosine at position 3","peptide":{"E":{"actual_length":8,"actual_sequence":"AVXNFATM","chain_id":"E","features":["sequence_mismatch"],"full_length":8,"full_sequence":"AVYNFATM"},"F":{"actual_length":8,"actual_sequence":"AVXNFATM","chain_id":"F","features":["sequence_mismatch"],"full_length":8,"full_sequence":"AVYNFATM"}},"peptide_length":8,"peptide_length_name":"octamer","peptide_neighbours":{"1":{"neighbours":[{"position":163,"residue":"THR"},{"position":167,"residue":"TRP"},{"position":159,"residue":"TYR"},{"position":59,"residue":"TYR"},{"position":7,"residue":"TYR"},{"position":62,"residue":"ARG"},{"position":66,"residue":"LYS"},{"position":63,"residue":"GLU"},{"position":5,"residue":"LEU"},{"position":171,"residue":"TYR"}],"position":1,"residue":"ALA"},"2":{"neighbours":[{"position":66,"residue":"LYS"},{"position":24,"residue":"GLU"},{"position":45,"residue":"TYR"},{"position":63,"residue":"GLU"},{"position":70,"residue":"ASN"},{"position":159,"residue":"TYR"},{"position":7,"residue":"TYR"}],"position":2,"residue":"VAL"},"4":{"neighbours":[{"position":70,"residue":"ASN"},{"position":155,"residue":"ARG"},{"position":66,"residue":"LYS"}],"position":4,"residue":"ASN"},"5":{"neighbours":[{"position":70,"residue":"ASN"},{"position":9,"residue":"VAL"},{"position":74,"residue":"PHE"},{"position":24,"residue":"GLU"},{"position":116,"residue":"TYR"},{"position":22,"residue":"TYR"},{"position":73,"residue":"SER"},{"position":114,"residue":"GLN"},{"position":99,"residue":"SER"},{"position":155,"residue":"ARG"},{"position":97,"residue":"VAL"}],"position":5,"residue":"PHE"},"6":{"neighbours":[{"position":116,"residue":"TYR"},{"position":73,"residue":"SER"},{"position":152,"residue":"GLU"},{"position":155,"residue":"ARG"},{"position":147,"residue":"TRP"},{"position":77,"residue":"ASP"}],"position":6,"residue":"ALA"},"7":{"neighbours":[{"position":147,"residue":"TRP"},{"position":73,"residue":"SER"},{"position":77,"residue":"ASP"},{"position":76,"residue":"VAL"}],"position":7,"residue":"THR"},"8":{"neighbours":[{"position":84,"residue":"TYR"},{"position":95,"residue":"ILE"},{"position":143,"residue":"THR"},{"position":123,"residue":"TYR"},{"position":77,"residue":"ASP"},{"position":74,"residue":"PHE"},{"position":80,"residue":"THR"},{"position":146,"residue":"LYS"},{"position":116,"residue":"TYR"},{"position":81,"residue":"LEU"},{"position":147,"residue":"TRP"}],"position":8,"residue":"MET"}},"peptide_sequence":"AVYNFATM","pockets":{"a":{"a159":{"number":159,"one_letter":"Y","three_letter":"TYR"},"a163":{"number":163,"one_letter":"T","three_letter":"THR"},"a167":{"number":167,"one_letter":"W","three_letter":"TRP"},"a171":{"number":171,"one_letter":"Y","three_letter":"TYR"},"a5":{"number":5,"one_letter":"L","three_letter":"LEU"},"a59":{"number":59,"one_letter":"Y","three_letter":"TYR"},"a63":{"number":63,"one_letter":"E","three_letter":"GLU"},"a66":{"number":66,"one_letter":"K","three_letter":"LYS"},"a7":{"number":7,"one_letter":"Y","three_letter":"TYR"}},"b":{"a24":{"number":24,"one_letter":"E","three_letter":"GLU"},"a34":{"number":34,"one_letter":"V","three_letter":"VAL"},"a45":{"number":45,"one_letter":"Y","three_letter":"TYR"},"a63":{"number":63,"one_letter":"E","three_letter":"GLU"},"a66":{"number":66,"one_letter":"K","three_letter":"LYS"},"a67":{"number":67,"one_letter":"A","three_letter":"ALA"},"a7":{"number":7,"one_letter":"Y","three_letter":"TYR"},"a70":{"number":70,"one_letter":"N","three_letter":"ASN"},"a9":{"number":9,"one_letter":"V","three_letter":"VAL"},"a99":{"number":99,"one_letter":"S","three_letter":"SER"}},"c":{"a70":{"number":70,"one_letter":"N","three_letter":"ASN"},"a73":{"number":73,"one_letter":"S","three_letter":"SER"},"a74":{"number":74,"one_letter":"F","three_letter":"PHE"},"a9":{"number":9,"one_letter":"V","three_letter":"VAL"},"a97":{"number":97,"one_letter":"V","three_letter":"VAL"}},"d":{"a114":{"number":114,"one_letter":"Q","three_letter":"GLN"},"a155":{"number":155,"one_letter":"R","three_letter":"ARG"},"a156":{"number":156,"one_letter":"L","three_letter":"LEU"},"a159":{"number":159,"one_letter":"Y","three_letter":"TYR"},"a160":{"number":160,"one_letter":"L","three_letter":"LEU"},"a99":{"number":99,"one_letter":"S","three_letter":"SER"}},"e":{"a114":{"number":114,"one_letter":"Q","three_letter":"GLN"},"a147":{"number":147,"one_letter":"W","three_letter":"TRP"},"a152":{"number":152,"one_letter":"E","three_letter":"GLU"},"a156":{"number":156,"one_letter":"L","three_letter":"LEU"},"a97":{"number":97,"one_letter":"V","three_letter":"VAL"}},"f":{"a116":{"number":116,"one_letter":"Y","three_letter":"TYR"},"a123":{"number":123,"one_letter":"Y","three_letter":"TYR"},"a143":{"number":143,"one_letter":"T","three_letter":"THR"},"a146":{"number":146,"one_letter":"K","three_letter":"LYS"},"a147":{"number":147,"one_letter":"W","three_letter":"TRP"},"a77":{"number":77,"one_letter":"D","three_letter":"ASP"},"a80":{"number":80,"one_letter":"T","three_letter":"THR"},"a81":{"number":81,"one_letter":"L","three_letter":"LEU"},"a84":{"number":84,"one_letter":"Y","three_letter":"TYR"},"a95":{"number":95,"one_letter":"I","three_letter":"ILE"}}},"publication":{"abstract":null,"bibjson":{"author":[{"initials":null,"lastname":null,"name":"Madhurantakam, C."},{"initials":null,"lastname":null,"name":"Duru, A.D."},{"initials":null,"lastname":null,"name":"Leong, C."},{"initials":null,"lastname":null,"name":"Sandalova, T."},{"initials":null,"lastname":null,"name":"Webb, J.R."},{"initials":null,"lastname":null,"name":"Achour, A."}],"identifier":[],"issue":[null],"journal":{"iso_abbreviation":null,"name":""},"pages":["-"],"title":"Nitro-tyrosination of the immunodominant LCMV epitope gp34-41 alters both its capacity to stabilize H-2Kb and the molecular surface of the MHC complex, affecting TCR recognition","type":"article","url":"","volume":[null],"year":[2012]},"in_pmc":null,"in_pmce":null,"open_access":null},"resolution":"2.60","same_as":{"pdbe":{"url":"https://www.ebi.ac.uk/pdbe/entry/pdb/3rol"},"rcsb":{"url":"https://www.rcsb.org/structure/3rol"}},"species":{"common_name":"Mouse","match_type":"histo:assign_species","scientific_name":"Mus musculus","slug":"mus_musculus"},"tcr":null,"title":"H2-Kb binding \"AVYNFATM\" at 2.60Å resolution","unique_chain_count":3}}