{"display":true,"structure":{"allele":{"alpha":{"identifier":"ipd-imgt:HLA34790","locus":"hla-a","match_type":"histo:exact","name":"HLA-A*24:02","slug":"hla_a_24_02","species_stem":"hla"},"beta":{}},"assemblies":{"1":{"assembly_name":"3wlb_1","chains":["A","B","C"],"downloaded_at":"2022-11-09T14:41:34.752744"}},"assembly_count":null,"assigned_chains":{"beta2m":{"chains":["B"],"match_type":"histo:assign_chains","score":0.99,"sequence":"MIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM"},"class_i_alpha":{"chains":["A"],"match_type":"histo:assign_chains","score":0.91,"sequence":"MGSHSMRYFSTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDEETGKVKAHSQTDRENLRIALRYYNQSEAGSHTLQMMFGCDVGSDGRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQITKRKWEAAHVAEQQRAYLEGTCVDGLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRW"},"peptide":{"chains":["C"],"match_type":"histo:classify_peptide","sequence":"NYTPGPGTRF"}},"chronology":{"deposition_date":"2013-11-08","deposition_year":2013,"release_date":"2014-06-11","release_year":2014,"revision_date":"2017-11-22","revision_year":2017},"class":"class_i","classical":true,"complex_type":"class_i_with_peptide","components":["class_i_alpha","beta2m","peptide"],"experimental_method":"X-ray diffraction","facets":{},"ligands":[],"locus":"hla-a","manually_edited":{},"missing_residues":[],"page_title":"3WLB | HLA-A*24:02 binding \"NYTPGPGTRF\"","pdb_code":"3wlb","pdb_title":"Hla-a24 in complex with hiv-1 nef126-10(8t10f)","peptide":{"C":{"actual_length":10,"actual_sequence":"NYTPGPGTRF","chain_id":"C","features":["correct_sequence_and_length"],"full_length":10,"full_sequence":"NYTPGPGTRF"}},"peptide_length":10,"peptide_length_name":"decamer","peptide_neighbours":{"1":{"neighbours":[{"position":170,"residue":"ARG"},{"position":171,"residue":"TYR"},{"position":99,"residue":"PHE"},{"position":163,"residue":"THR"},{"position":63,"residue":"GLU"},{"position":66,"residue":"LYS"},{"position":159,"residue":"TYR"},{"position":166,"residue":"ASP"},{"position":167,"residue":"GLY"},{"position":5,"residue":"MET"},{"position":7,"residue":"TYR"},{"position":33,"residue":"PHE"},{"position":59,"residue":"TYR"}],"position":1,"residue":"ASN"},"10":{"neighbours":[{"position":80,"residue":"ILE"},{"position":146,"residue":"LYS"},{"position":84,"residue":"TYR"},{"position":95,"residue":"LEU"},{"position":142,"residue":"ILE"},{"position":77,"residue":"ASN"},{"position":147,"residue":"TRP"},{"position":124,"residue":"ILE"},{"position":143,"residue":"THR"},{"position":116,"residue":"TYR"},{"position":123,"residue":"TYR"},{"position":81,"residue":"ALA"}],"position":10,"residue":"PHE"},"2":{"neighbours":[{"position":159,"residue":"TYR"},{"position":7,"residue":"TYR"},{"position":70,"residue":"HIS"},{"position":9,"residue":"SER"},{"position":99,"residue":"PHE"},{"position":24,"residue":"ALA"},{"position":22,"residue":"PHE"},{"position":63,"residue":"GLU"},{"position":66,"residue":"LYS"},{"position":45,"residue":"MET"},{"position":67,"residue":"VAL"}],"position":2,"residue":"TYR"},"3":{"neighbours":[{"position":159,"residue":"TYR"},{"position":156,"residue":"GLN"},{"position":99,"residue":"PHE"},{"position":66,"residue":"LYS"}],"position":3,"residue":"THR"},"4":{"neighbours":[{"position":159,"residue":"TYR"},{"position":156,"residue":"GLN"},{"position":66,"residue":"LYS"}],"position":4,"residue":"PRO"},"6":{"neighbours":[{"position":155,"residue":"GLN"}],"position":6,"residue":"PRO"},"7":{"neighbours":[{"position":73,"residue":"THR"}],"position":7,"residue":"GLY"},"8":{"neighbours":[{"position":152,"residue":"VAL"},{"position":150,"residue":"ALA"},{"position":73,"residue":"THR"},{"position":77,"residue":"ASN"},{"position":147,"residue":"TRP"}],"position":8,"residue":"THR"},"9":{"neighbours":[{"position":76,"residue":"GLU"},{"position":143,"residue":"THR"},{"position":80,"residue":"ILE"},{"position":147,"residue":"TRP"},{"position":146,"residue":"LYS"},{"position":73,"residue":"THR"},{"position":77,"residue":"ASN"}],"position":9,"residue":"ARG"}},"peptide_sequence":"NYTPGPGTRF","pockets":{"a":{"a159":{"number":159,"one_letter":"A","three_letter":"ALA"},"a163":{"number":163,"one_letter":"G","three_letter":"GLY"},"a167":{"number":167,"one_letter":"D","three_letter":"ASP"},"a171":{"number":171,"one_letter":"R","three_letter":"ARG"},"a5":{"number":5,"one_letter":"S","three_letter":"SER"},"a59":{"number":59,"one_letter":"E","three_letter":"GLU"},"a63":{"number":63,"one_letter":"E","three_letter":"GLU"},"a66":{"number":66,"one_letter":"G","three_letter":"GLY"},"a7":{"number":7,"one_letter":"R","three_letter":"ARG"}},"b":{"a24":{"number":24,"one_letter":"I","three_letter":"ILE"},"a34":{"number":34,"one_letter":"F","three_letter":"PHE"},"a45":{"number":45,"one_letter":"R","three_letter":"ARG"},"a63":{"number":63,"one_letter":"E","three_letter":"GLU"},"a66":{"number":66,"one_letter":"G","three_letter":"GLY"},"a67":{"number":67,"one_letter":"K","three_letter":"LYS"},"a7":{"number":7,"one_letter":"R","three_letter":"ARG"},"a70":{"number":70,"one_letter":"A","three_letter":"ALA"},"a9":{"number":9,"one_letter":"F","three_letter":"PHE"},"a99":{"number":99,"one_letter":"M","three_letter":"MET"}},"c":{"a70":{"number":70,"one_letter":"A","three_letter":"ALA"},"a73":{"number":73,"one_letter":"Q","three_letter":"GLN"},"a74":{"number":74,"one_letter":"T","three_letter":"THR"},"a9":{"number":9,"one_letter":"F","three_letter":"PHE"},"a97":{"number":97,"one_letter":"Q","three_letter":"GLN"}},"d":{"a114":{"number":114,"one_letter":"Y","three_letter":"TYR"},"a155":{"number":155,"one_letter":"E","three_letter":"GLU"},"a156":{"number":156,"one_letter":"Q","three_letter":"GLN"},"a159":{"number":159,"one_letter":"A","three_letter":"ALA"},"a160":{"number":160,"one_letter":"Y","three_letter":"TYR"},"a99":{"number":99,"one_letter":"M","three_letter":"MET"}},"e":{"a114":{"number":114,"one_letter":"Y","three_letter":"TYR"},"a147":{"number":147,"one_letter":"K","three_letter":"LYS"},"a152":{"number":152,"one_letter":"H","three_letter":"HIS"},"a156":{"number":156,"one_letter":"Q","three_letter":"GLN"},"a97":{"number":97,"one_letter":"Q","three_letter":"GLN"}},"f":{"a116":{"number":116,"one_letter":"Q","three_letter":"GLN"},"a123":{"number":123,"one_letter":"D","three_letter":"ASP"},"a143":{"number":143,"one_letter":"I","three_letter":"ILE"},"a146":{"number":146,"one_letter":"R","three_letter":"ARG"},"a147":{"number":147,"one_letter":"K","three_letter":"LYS"},"a77":{"number":77,"one_letter":"E","three_letter":"GLU"},"a80":{"number":80,"one_letter":"R","three_letter":"ARG"},"a81":{"number":81,"one_letter":"I","three_letter":"ILE"},"a84":{"number":84,"one_letter":"R","three_letter":"ARG"},"a95":{"number":95,"one_letter":"T","three_letter":"THR"}}},"publication":{"abstract":null,"bibjson":{"author":[{"initials":"C","lastname":"Han","name":"Han C"},{"initials":"A","lastname":"Kawana-Tachikawa","name":"Kawana-Tachikawa A"},{"initials":"A","lastname":"Shimizu","name":"Shimizu A"},{"initials":"D","lastname":"Zhu","name":"Zhu D"},{"initials":"H","lastname":"Nakamura","name":"Nakamura H"},{"initials":"E","lastname":"Adachi","name":"Adachi E"},{"initials":"T","lastname":"Kikuchi","name":"Kikuchi T"},{"initials":"M","lastname":"Koga","name":"Koga M"},{"initials":"T","lastname":"Koibuchi","name":"Koibuchi T"},{"initials":"GF","lastname":"Gao","name":"Gao GF"},{"initials":"Y","lastname":"Sato","name":"Sato Y"},{"initials":"A","lastname":"Yamagata","name":"Yamagata A"},{"initials":"E","lastname":"Martin","name":"Martin E"},{"initials":"S","lastname":"Fukai","name":"Fukai S"},{"initials":"ZL","lastname":"Brumme","name":"Brumme ZL"},{"initials":"A","lastname":"Iwamoto","name":"Iwamoto A"}],"identifier":[{"id":"10.1186/1742-4690-11-38","type":"doi"},{"id":"24886641","type":"pubmed"}],"issue":["1"],"journal":{"iso_abbreviation":"Retrovirology","name":""},"pages":["38"],"title":"Switching and emergence of CTL epitopes in HIV-1 infection.","type":"article","url":"https://retrovirology.biomedcentral.com/articles/10.1186/1742-4690-11-38","volume":["11"],"year":[2014]},"in_pmc":"N","in_pmce":"Y","open_access":"Y"},"resolution":"2.00","same_as":{"pdbe":{"url":"https://www.ebi.ac.uk/pdbe/entry/pdb/3wlb"},"rcsb":{"url":"https://www.rcsb.org/structure/3wlb"}},"species":{"common_name":"Human","match_type":"histo:assign_species","scientific_name":"Homo sapiens","slug":"homo_sapiens"},"tcr":null,"title":"HLA-A*24:02 binding \"NYTPGPGTRF\" at 2.00&#8491; resolution","unique_chain_count":3}}
