{"display":true,"structure":{"allele":{"alpha":{"identifier":"ipd-imgt:HLA35266","locus":"hla-a","match_type":"histo:exact","name":"HLA-A*02:01","slug":"hla_a_02_01","species_stem":"hla"},"beta":{}},"assemblies":{"1":{"assembly_name":"5e6i_1","chains":["G","H","I","J","K"],"downloaded_at":"2022-11-09T14:31:29.836244"}},"assembly_count":null,"assigned_chains":{"beta2m":{"chains":["J","D","N","U"],"match_type":"histo:assign_chains","score":0.99,"sequence":"MIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM"},"class_i_alpha":{"chains":["I","C","M","R"],"match_type":"histo:assign_chains","score":1.0,"sequence":"MGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYGCDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRWE"},"peptide":{"chains":["K","E","O","T"],"match_type":"histo:classify_peptide","sequence":"GILGFVFTL"},"tcr_alpha":{"chains":["G"],"match_type":"stcrdab","sequence":"MGQQLNQSPQSMFIQEGEDVSMNCTSSSIFNTWLWYKQEPGEGPVLLIALYKAGELTSNGRLTAQFGITRKDSFLNISASIPSDVGIYFCAGPGGSSNTGKLIFGQGTTLQVKPDIQNPDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSNKSDFACANAFNNSIIPEDTFFPSPESS","subgroup":"TRAV35"},"tcr_beta":{"chains":["H"],"match_type":"stcrdab","sequence":"MEAQVTQNPRYLITVTGKELTVTCSQNMNHEYMSWYRQDPGLGLRQIYYSMNVEVTDKGDVPEGYKVSRKEKRNFPLILESPSPNQTSLYFCASSLIYPGELFFGEGSRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSENDEWTQDRAKPVTQIVSAEAWGRAD","subgroup":"TRBV27"}},"chronology":{"deposition_date":"2015-10-09","deposition_year":2015,"release_date":"2016-10-19","release_year":2016,"revision_date":"2020-01-29","revision_year":2020},"class":"class_i","classical":true,"complex_type":"class_i_with_peptide_and_alpha_beta_tcr","components":["class_i_alpha","beta2m","peptide","tcr_alpha","tcr_beta"],"experimental_method":"X-ray diffraction","facets":{},"ligands":[],"locus":"hla-a","manually_edited":{},"missing_residues":[],"page_title":"5E6I | HLA-A*02:01 presenting \"GILGFVFTL\" to Alpha/Beta T cell receptor","pdb_code":"5e6i","pdb_title":"Crystal structure of TCR PF8 in complex with flu MP(58-66) epitope presented by HLA-A2","peptide":{"E":{"actual_length":9,"actual_sequence":"GILGFVFTL","chain_id":"E","features":["correct_sequence_and_length"],"full_length":9,"full_sequence":"GILGFVFTL"},"K":{"actual_length":9,"actual_sequence":"GILGFVFTL","chain_id":"K","features":["correct_sequence_and_length"],"full_length":9,"full_sequence":"GILGFVFTL"},"O":{"actual_length":9,"actual_sequence":"GILGFVFTL","chain_id":"O","features":["correct_sequence_and_length"],"full_length":9,"full_sequence":"GILGFVFTL"},"T":{"actual_length":9,"actual_sequence":"GILGFVFTL","chain_id":"T","features":["correct_sequence_and_length"],"full_length":9,"full_sequence":"GILGFVFTL"}},"peptide_length":9,"peptide_length_name":"nonamer","peptide_neighbours":{"1":{"neighbours":[{"position":171,"residue":"TYR"},{"position":7,"residue":"TYR"},{"position":159,"residue":"TYR"},{"position":59,"residue":"TYR"},{"position":63,"residue":"GLU"},{"position":5,"residue":"MET"},{"position":167,"residue":"TRP"}],"position":1,"residue":"GLY"},"2":{"neighbours":[{"position":99,"residue":"TYR"},{"position":159,"residue":"TYR"},{"position":63,"residue":"GLU"},{"position":70,"residue":"HIS"},{"position":66,"residue":"LYS"},{"position":9,"residue":"PHE"},{"position":167,"residue":"TRP"},{"position":7,"residue":"TYR"}],"position":2,"residue":"ILE"},"3":{"neighbours":[{"position":99,"residue":"TYR"},{"position":159,"residue":"TYR"},{"position":70,"residue":"HIS"},{"position":66,"residue":"LYS"},{"position":114,"residue":"HIS"},{"position":97,"residue":"ARG"},{"position":156,"residue":"LEU"}],"position":3,"residue":"LEU"},"4":{"neighbours":[{"position":159,"residue":"TYR"},{"position":66,"residue":"LYS"}],"position":4,"residue":"GLY"},"5":{"neighbours":[{"position":159,"residue":"TYR"},{"position":152,"residue":"VAL"},{"position":70,"residue":"HIS"},{"position":97,"residue":"ARG"},{"position":155,"residue":"GLN"},{"position":156,"residue":"LEU"}],"position":5,"residue":"PHE"},"6":{"neighbours":[{"position":70,"residue":"HIS"},{"position":97,"residue":"ARG"},{"position":69,"residue":"ALA"},{"position":73,"residue":"THR"}],"position":6,"residue":"VAL"},"7":{"neighbours":[{"position":114,"residue":"HIS"},{"position":97,"residue":"ARG"},{"position":152,"residue":"VAL"},{"position":156,"residue":"LEU"},{"position":73,"residue":"THR"},{"position":116,"residue":"TYR"},{"position":147,"residue":"TRP"},{"position":77,"residue":"ASP"}],"position":7,"residue":"PHE"},"8":{"neighbours":[{"position":76,"residue":"VAL"},{"position":73,"residue":"THR"},{"position":147,"residue":"TRP"},{"position":77,"residue":"ASP"}],"position":8,"residue":"THR"},"9":{"neighbours":[{"position":147,"residue":"TRP"},{"position":143,"residue":"THR"},{"position":123,"residue":"TYR"},{"position":95,"residue":"VAL"},{"position":124,"residue":"ILE"},{"position":116,"residue":"TYR"},{"position":81,"residue":"LEU"},{"position":77,"residue":"ASP"},{"position":80,"residue":"THR"}],"position":9,"residue":"LEU"}},"peptide_sequence":"GILGFVFTL","pockets":{"a":{"a159":{"number":159,"one_letter":"A","three_letter":"ALA"},"a163":{"number":163,"one_letter":"G","three_letter":"GLY"},"a167":{"number":167,"one_letter":"E","three_letter":"GLU"},"a171":{"number":171,"one_letter":"R","three_letter":"ARG"},"a5":{"number":5,"one_letter":"S","three_letter":"SER"},"a59":{"number":59,"one_letter":"E","three_letter":"GLU"},"a63":{"number":63,"one_letter":"G","three_letter":"GLY"},"a66":{"number":66,"one_letter":"R","three_letter":"ARG"},"a7":{"number":7,"one_letter":"R","three_letter":"ARG"}},"b":{"a24":{"number":24,"one_letter":"I","three_letter":"ILE"},"a34":{"number":34,"one_letter":"F","three_letter":"PHE"},"a45":{"number":45,"one_letter":"R","three_letter":"ARG"},"a63":{"number":63,"one_letter":"G","three_letter":"GLY"},"a66":{"number":66,"one_letter":"R","three_letter":"ARG"},"a67":{"number":67,"one_letter":"K","three_letter":"LYS"},"a7":{"number":7,"one_letter":"R","three_letter":"ARG"},"a70":{"number":70,"one_letter":"A","three_letter":"ALA"},"a9":{"number":9,"one_letter":"F","three_letter":"PHE"},"a99":{"number":99,"one_letter":"M","three_letter":"MET"}},"c":{"a70":{"number":70,"one_letter":"A","three_letter":"ALA"},"a73":{"number":73,"one_letter":"Q","three_letter":"GLN"},"a74":{"number":74,"one_letter":"T","three_letter":"THR"},"a9":{"number":9,"one_letter":"F","three_letter":"PHE"},"a97":{"number":97,"one_letter":"Q","three_letter":"GLN"}},"d":{"a114":{"number":114,"one_letter":"Y","three_letter":"TYR"},"a155":{"number":155,"one_letter":"E","three_letter":"GLU"},"a156":{"number":156,"one_letter":"Q","three_letter":"GLN"},"a159":{"number":159,"one_letter":"A","three_letter":"ALA"},"a160":{"number":160,"one_letter":"Y","three_letter":"TYR"},"a99":{"number":99,"one_letter":"M","three_letter":"MET"}},"e":{"a114":{"number":114,"one_letter":"Y","three_letter":"TYR"},"a147":{"number":147,"one_letter":"K","three_letter":"LYS"},"a152":{"number":152,"one_letter":"H","three_letter":"HIS"},"a156":{"number":156,"one_letter":"Q","three_letter":"GLN"},"a97":{"number":97,"one_letter":"Q","three_letter":"GLN"}},"f":{"a116":{"number":116,"one_letter":"Q","three_letter":"GLN"},"a123":{"number":123,"one_letter":"D","three_letter":"ASP"},"a143":{"number":143,"one_letter":"T","three_letter":"THR"},"a146":{"number":146,"one_letter":"H","three_letter":"HIS"},"a147":{"number":147,"one_letter":"K","three_letter":"LYS"},"a77":{"number":77,"one_letter":"V","three_letter":"VAL"},"a80":{"number":80,"one_letter":"G","three_letter":"GLY"},"a81":{"number":81,"one_letter":"T","three_letter":"THR"},"a84":{"number":84,"one_letter":"G","three_letter":"GLY"},"a95":{"number":95,"one_letter":"T","three_letter":"THR"}}},"publication":{"abstract":null,"bibjson":{"author":[{"initials":null,"lastname":null,"name":"Gao, M."}],"identifier":[],"title":"Crystal structure of TCR PF8 in complex with flu MP(58-66) epitope presented by HLA-A2","type":"article","url":""},"in_pmc":null,"in_pmce":null,"open_access":null},"resolution":"4.00","same_as":{"pdbe":{"url":"https://www.ebi.ac.uk/pdbe/entry/pdb/5e6i"},"rcsb":{"url":"https://www.rcsb.org/structure/5e6i"},"stcrdab":{"url":"http://opig.stats.ox.ac.uk/webapps/stcrdab/StrViewer?pdb=5e6i"}},"species":{"common_name":"Human","match_type":"histo:assign_species","scientific_name":"Homo sapiens","slug":"homo_sapiens"},"tcr":{"alpha":{"chains":["G"],"subgroup":"TRAV35"},"beta":{"chains":["H"],"subgroup":"TRBV27"},"mhc_type":"class_i","pdb_code":"5e6i"},"title":"HLA-A*02:01 presenting \"GILGFVFTL\" to Alpha/Beta T cell receptor at 4.00Å resolution","unique_chain_count":5}}