{"display":true,"structure":{"allele":{"alpha":{"identifier":"ipd-imgt:HLA34051","locus":"hla-b","match_type":"histo:exact","name":"HLA-B*57:01","slug":"hla_b_57_01","species_stem":"hla"},"beta":{}},"assemblies":{"1":{"assembly_name":"5v5m_1","chains":["A","B","E"],"downloaded_at":"2022-11-09T14:37:20.199225"},"2":{"assembly_name":"5v5m_2","chains":["C","D","F"],"downloaded_at":"2022-11-09T14:37:20.616641"}},"assembly_count":null,"assigned_chains":{"beta2m":{"chains":["B","D"],"match_type":"histo:assign_chains","score":1.0,"sequence":"IQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM"},"class_i_alpha":{"chains":["A","C"],"match_type":"histo:assign_chains","score":0.92,"sequence":"GSHSMRYFYTAMSRPGRGEPRFIAVGYVDDTQFVRFDSDAASPRMAPRAPWIEQEGPEYWDGETRNMKASAQTYRENLRIALRYYNQSEAGSHIIQVMYGCDVGPDGRLLRGHDQSAYDGKDYIALNEDLSSWTAADTAAQITQRKWEAARVAEQLRAYLEGLCVEWLRRYLENGKETLQRADPPKTHVTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEPHH"},"peptide":{"chains":["E","F"],"match_type":"histo:classify_peptide","sequence":"TSTLQEQIGW"}},"chronology":{"deposition_date":"2017-03-14","deposition_year":2017,"release_date":"2017-06-14","release_year":2017,"revision_date":"2017-07-12","revision_year":2017},"class":"class_i","classical":true,"complex_type":"class_i_with_peptide","components":["class_i_alpha","beta2m","peptide"],"experimental_method":"X-ray diffraction","facets":{},"ligands":[],"locus":"hla-b","manually_edited":{},"missing_residues":[],"page_title":"5V5M | HLA-B*57:01 binding \"TSTLQEQIGW\"","pdb_code":"5v5m","pdb_title":"Crystal structure of hla-b*5701 complex with hiv-1 gag derived peptide tw10","peptide":{"E":{"actual_length":10,"actual_sequence":"TSTLQEQIGW","chain_id":"E","features":["correct_sequence_and_length"],"full_length":10,"full_sequence":"TSTLQEQIGW"},"F":{"actual_length":10,"actual_sequence":"TSTLQEQIGW","chain_id":"F","features":["correct_sequence_and_length"],"full_length":10,"full_sequence":"TSTLQEQIGW"}},"peptide_length":10,"peptide_length_name":"decamer","peptide_neighbours":{"1":{"neighbours":[{"position":63,"residue":"GLU"},{"position":167,"residue":"TRP"},{"position":159,"residue":"TYR"},{"position":62,"residue":"GLY"},{"position":66,"residue":"ASN"},{"position":163,"residue":"LEU"}],"position":1,"residue":"THR"},"10":{"neighbours":[{"position":84,"residue":"TYR"},{"position":123,"residue":"TYR"},{"position":95,"residue":"ILE"},{"position":142,"residue":"ILE"},{"position":146,"residue":"LYS"},{"position":74,"residue":"TYR"},{"position":116,"residue":"SER"},{"position":81,"residue":"ALA"},{"position":117,"residue":"ALA"},{"position":77,"residue":"ASN"},{"position":80,"residue":"ILE"},{"position":143,"residue":"THR"},{"position":118,"residue":"TYR"},{"position":147,"residue":"TRP"}],"position":10,"residue":"TRP"},"2":{"neighbours":[{"position":7,"residue":"TYR"},{"position":59,"residue":"TYR"},{"position":159,"residue":"TYR"},{"position":63,"residue":"GLU"},{"position":167,"residue":"TRP"},{"position":5,"residue":"MET"},{"position":33,"residue":"PHE"},{"position":171,"residue":"TYR"}],"position":2,"residue":"SER"},"3":{"neighbours":[{"position":67,"residue":"MET"},{"position":9,"residue":"TYR"},{"position":7,"residue":"TYR"},{"position":99,"residue":"TYR"},{"position":159,"residue":"TYR"},{"position":66,"residue":"ASN"},{"position":45,"residue":"MET"},{"position":63,"residue":"GLU"}],"position":3,"residue":"THR"},"4":{"neighbours":[{"position":70,"residue":"SER"},{"position":99,"residue":"TYR"},{"position":155,"residue":"GLN"},{"position":159,"residue":"TYR"},{"position":66,"residue":"ASN"},{"position":156,"residue":"LEU"},{"position":9,"residue":"TYR"}],"position":4,"residue":"LEU"},"5":{"neighbours":[{"position":66,"residue":"ASN"}],"position":5,"residue":"GLN"},"6":{"neighbours":[{"position":155,"residue":"GLN"},{"position":159,"residue":"TYR"}],"position":6,"residue":"GLU"},"7":{"neighbours":[{"position":70,"residue":"SER"},{"position":66,"residue":"ASN"},{"position":73,"residue":"THR"},{"position":69,"residue":"ALA"}],"position":7,"residue":"GLN"},"8":{"neighbours":[{"position":147,"residue":"TRP"},{"position":73,"residue":"THR"},{"position":156,"residue":"LEU"},{"position":152,"residue":"VAL"},{"position":77,"residue":"ASN"}],"position":8,"residue":"ILE"},"9":{"neighbours":[{"position":73,"residue":"THR"},{"position":147,"residue":"TRP"},{"position":77,"residue":"ASN"},{"position":80,"residue":"ILE"}],"position":9,"residue":"GLY"}},"peptide_sequence":"TSTLQEQIGW","pockets":{"a":{"a159":{"number":159,"one_letter":"Y","three_letter":"TYR"},"a163":{"number":163,"one_letter":"L","three_letter":"LEU"},"a167":{"number":167,"one_letter":"W","three_letter":"TRP"},"a171":{"number":171,"one_letter":"Y","three_letter":"TYR"},"a5":{"number":5,"one_letter":"M","three_letter":"MET"},"a59":{"number":59,"one_letter":"Y","three_letter":"TYR"},"a63":{"number":63,"one_letter":"E","three_letter":"GLU"},"a66":{"number":66,"one_letter":"N","three_letter":"ASN"},"a7":{"number":7,"one_letter":"Y","three_letter":"TYR"}},"b":{"a24":{"number":24,"one_letter":"A","three_letter":"ALA"},"a34":{"number":34,"one_letter":"V","three_letter":"VAL"},"a45":{"number":45,"one_letter":"M","three_letter":"MET"},"a63":{"number":63,"one_letter":"E","three_letter":"GLU"},"a66":{"number":66,"one_letter":"N","three_letter":"ASN"},"a67":{"number":67,"one_letter":"M","three_letter":"MET"},"a7":{"number":7,"one_letter":"Y","three_letter":"TYR"},"a70":{"number":70,"one_letter":"S","three_letter":"SER"},"a9":{"number":9,"one_letter":"Y","three_letter":"TYR"},"a99":{"number":99,"one_letter":"Y","three_letter":"TYR"}},"c":{"a70":{"number":70,"one_letter":"S","three_letter":"SER"},"a73":{"number":73,"one_letter":"T","three_letter":"THR"},"a74":{"number":74,"one_letter":"Y","three_letter":"TYR"},"a9":{"number":9,"one_letter":"Y","three_letter":"TYR"},"a97":{"number":97,"one_letter":"V","three_letter":"VAL"}},"d":{"a114":{"number":114,"one_letter":"D","three_letter":"ASP"},"a155":{"number":155,"one_letter":"Q","three_letter":"GLN"},"a156":{"number":156,"one_letter":"L","three_letter":"LEU"},"a159":{"number":159,"one_letter":"Y","three_letter":"TYR"},"a160":{"number":160,"one_letter":"L","three_letter":"LEU"},"a99":{"number":99,"one_letter":"Y","three_letter":"TYR"}},"e":{"a114":{"number":114,"one_letter":"D","three_letter":"ASP"},"a147":{"number":147,"one_letter":"W","three_letter":"TRP"},"a152":{"number":152,"one_letter":"V","three_letter":"VAL"},"a156":{"number":156,"one_letter":"L","three_letter":"LEU"},"a97":{"number":97,"one_letter":"V","three_letter":"VAL"}},"f":{"a116":{"number":116,"one_letter":"S","three_letter":"SER"},"a123":{"number":123,"one_letter":"Y","three_letter":"TYR"},"a143":{"number":143,"one_letter":"T","three_letter":"THR"},"a146":{"number":146,"one_letter":"K","three_letter":"LYS"},"a147":{"number":147,"one_letter":"W","three_letter":"TRP"},"a77":{"number":77,"one_letter":"N","three_letter":"ASN"},"a80":{"number":80,"one_letter":"I","three_letter":"ILE"},"a81":{"number":81,"one_letter":"A","three_letter":"ALA"},"a84":{"number":84,"one_letter":"Y","three_letter":"TYR"},"a95":{"number":95,"one_letter":"I","three_letter":"ILE"}}},"publication":{"abstract":null,"bibjson":{"author":[{"initials":"X","lastname":"Li","name":"Li X"},{"initials":"PA","lastname":"Lamothe","name":"Lamothe PA"},{"initials":"BD","lastname":"Walker","name":"Walker BD"},{"initials":"JH","lastname":"Wang","name":"Wang JH"}],"identifier":[{"id":"10.1038/cmi.2017.24","type":"doi"},{"id":"28552904","type":"pubmed"}],"issue":[null],"journal":{"iso_abbreviation":"Cell. Mol. Immunol.","name":""},"pages":[null],"title":"Crystal structure of HLA-B*5801 with a TW10 HIV Gag epitope reveals a novel mode of peptide presentation.","type":"article","url":"http://www.nature.com/articles/cmi201724","volume":[null],"year":[2017]},"in_pmc":"N","in_pmce":"Y","open_access":"N"},"resolution":"2.88","same_as":{"pdbe":{"url":"https://www.ebi.ac.uk/pdbe/entry/pdb/5v5m"},"rcsb":{"url":"https://www.rcsb.org/structure/5v5m"}},"species":{"common_name":"Human","match_type":"histo:assign_species","scientific_name":"Homo sapiens","slug":"homo_sapiens"},"tcr":null,"title":"HLA-B*57:01 binding \"TSTLQEQIGW\" at 2.88Å resolution","unique_chain_count":3}}